gatk3的最后一个经典版本3.8

Mark DePristo aa7f172b18 Cap the computational cost of the kmer based error correction in the DeBruijnGraph ... -- Simply don't do more than MAX_CORRECTION_OPS_TO_ALLOW = 5000 * 1000 operations to correct a graph. If the number of ops would exceed this threshold, the original graph is used. -- Overall the algorithm is just extremely computational expensive, and actually doesn't implement the correct correction. So we live with this limitations while we continue to explore better algorithms -- Updating MD5s to reflect changes in assembly algorithms		2013-03-21 09:21:35 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Cap the computational cost of the kmer based error correction in the DeBruijnGraph	2013-03-21 09:21:35 -04:00
public	Misc. fixes upon pull request review	2013-03-20 22:54:37 -04:00
settings	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Fix tests that were consistently or intermittently failing when run in parallel on the farm	2013-03-06 13:56:54 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00