Mark DePristo e56d52006a Continuing bugfixes to get new VC working		2011-11-16 10:39:17 -05:00
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datasources	GATKSAMRecord refactor	2011-11-03 15:43:26 -04:00
executive	…
filters	…
iterators	GATKSAMRecord refactor	2011-11-03 15:43:26 -04:00
refdata	ID field now stored in the VariantContext itself, not the attributes	2011-11-15 14:56:33 -05:00
report	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
samples	Fixed bad expected value in PedReaderUnitTest	2011-10-06 08:16:47 -07:00
traversals	BugFix for unit test	2011-09-07 14:54:10 -04:00
walkers	Continuing bugfixes to get new VC working	2011-11-16 10:39:17 -05:00
EngineFeaturesIntegrationTest.java	Thanks to Mark for agreeing to transition from 'variants' back to 'variant'. I think I got them all but I've been jumping all around the code, so there might be a straggler or two.	2011-08-09 12:04:55 -04:00
GenomeAnalysisEngineUnitTest.java	Allow processing of empty intervals, but warn user when this case is encountered.	2011-10-28 12:12:14 -04:00
WalkerManagerUnitTest.java	Moving more tools over to use the standard VC arg collection. Also, while I'm in there, I removed all of the empty references to @Requires given that it's no longer relevant.	2011-08-10 12:20:18 -04:00