gatk3的最后一个经典版本3.8

Eric Banks a99f3d6adf Don't use old CC and TR commands. Not fixing for now, just want to see whether I can get this to pass first. ... Signed-off-by: Mark DePristo <depristo@broadinstitute.org>		2012-07-25 08:56:38 -04:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Renaming BQSR to BaseRecalibrator	2012-07-23 10:17:17 -04:00
public	a) Document BEAGLE codec, b) Bug fix: inbreeding coefficient shouldn't be computed for non-diploid organisms in current implementaiton	2012-07-24 12:16:15 -04:00
settings	Added the ability to update the Forum	2012-07-23 17:17:33 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
ivy.xml	Added the ability to update the Forum	2012-07-23 17:17:33 -04:00