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gatk-3.8/public/java/src/org/broadinstitute/sting/utils/help
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Geraldine Van der Auwera 6b4d88ebe9 Created ListAnnotations utility (extends CommandLineProgram) 
--Refactored listAnnotations basic method out of VA into HelpUtils
	--HelpUtils.listAnnotations() is now called by both VA and the new ListAnnotations utility (lives in sting.tools)
	--This way we keep the VA --list option but we also offer a way to list annotations without a full valid VA command-line, which was a pain users continually complained about
	--We could get rid of the VA --list option altogether ...?
 		2013-03-20 06:15:27 -04:00
..
ApplicationDetails.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
DocumentedGATKFeature.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
DocumentedGATKFeatureHandler.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
DocumentedGATKFeatureObject.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
ForumAPIUtils.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
ForumDiscussion.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
GATKDocUtils.java Reorganized walker categories in GATKDocs (@DocumentedGATKFeature details) 2013-02-12 13:36:15 -05:00
GATKDocWorkUnit.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
GATKDoclet.java Added GATKDocs fct to indicate default Read Filters for each tool 2013-02-19 16:12:29 -05:00
GenericDocumentationHandler.java Added several more info types / annotations to GATKDocs 2013-02-21 03:12:40 -05:00
HelpConstants.java Created ListAnnotations utility (extends CommandLineProgram) 2013-03-20 06:15:27 -04:00
HelpFormatter.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
HelpUtils.java Created ListAnnotations utility (extends CommandLineProgram) 2013-03-20 06:15:27 -04:00
ResourceBundleExtractorDoclet.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00