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gatk-3.8/public/java/src/org/broadinstitute/sting/utils/exceptions
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Geraldine Van der Auwera d70bf64737 Created new DeprecatedToolChecks class 
--Based on existing code in GenomeAnalysisEngine
	--Hashmaps hold mapping of deprecated tool name to version number and recommended replacement (if any)
	--Using FastUtils for maps; specifically Object2ObjectMap but there could be a better type for Strings...
	--Added user exception for deprecated annotations
	--Added deprecation check to AnnotationInterfaceManager.validateAnnotations
	--Run when annotations are initialized
	--Made annotation sets instead of lists
 		2013-03-20 06:46:02 -04:00
..
DynamicClassResolutionException.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
ReviewedStingException.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
StingException.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
UserException.java Created new DeprecatedToolChecks class 2013-03-20 06:46:02 -04:00