Ryan Poplin 38914384d1 Changing CALLED_IN_DB_UNKNOWN_STATUS to count as TRUE_POSITIVEs in the simplified stats for AssessNA12878.		2013-03-14 14:44:18 -04:00
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ActiveRegion.java	Replace Smith-Waterman alignment with the bubble traversal.	2013-02-22 15:42:16 -05:00
ActiveRegionReadState.java	Renaming IncrementalActivityProfile to ActivityProfile	2013-01-23 13:46:01 -05:00
ActivityProfile.java	Changing CALLED_IN_DB_UNKNOWN_STATUS to count as TRUE_POSITIVEs in the simplified stats for AssessNA12878.	2013-03-14 14:44:18 -04:00
ActivityProfileState.java	Added realistic BandPassFilterUnitTest that ensures quality results for 1000G phase I VCF and NA12878 VCF	2013-01-27 14:10:08 -05:00
BandPassActivityProfile.java	ActivityProfile and ActiveRegions respects engine interval boundaries	2013-02-18 10:40:25 -05:00