gatk-3.8/public/java/src/org/broadinstitute/sting/utils/activeregion
Ryan Poplin 38914384d1 Changing CALLED_IN_DB_UNKNOWN_STATUS to count as TRUE_POSITIVEs in the simplified stats for AssessNA12878. 2013-03-14 14:44:18 -04:00
..
ActiveRegion.java Replace Smith-Waterman alignment with the bubble traversal. 2013-02-22 15:42:16 -05:00
ActiveRegionReadState.java Renaming IncrementalActivityProfile to ActivityProfile 2013-01-23 13:46:01 -05:00
ActivityProfile.java Changing CALLED_IN_DB_UNKNOWN_STATUS to count as TRUE_POSITIVEs in the simplified stats for AssessNA12878. 2013-03-14 14:44:18 -04:00
ActivityProfileState.java Added realistic BandPassFilterUnitTest that ensures quality results for 1000G phase I VCF and NA12878 VCF 2013-01-27 14:10:08 -05:00
BandPassActivityProfile.java ActivityProfile and ActiveRegions respects engine interval boundaries 2013-02-18 10:40:25 -05:00