d7bec9eb6e
-- @Output isn't required for AssessNA12878 -- Previous version would could non-variant sites in NA12878 that resulted from subsetting a multi-sample VC to NA12878 as CALLED_BUT_NOT_IN_DB sites. Now they are properly skipped -- Bugfix for subsetting samples to NA12878. Previous version wouldn't trim the alleles when subsetting down a multi-sample VCF, so we'd have false FN/FP sites at indels when the multi-sample VCF has alleles that result in the subset for NA12878 having non-trimmed alleles. Fixed and unit tested now. |
||
|---|---|---|
| .. | ||
| GATKVariantContextUtilsUnitTest.java | ||
| VCFIntegrationTest.java | ||
| VariantContextBenchmark.java | ||