gatk3的最后一个经典版本3.8

Mark DePristo a90482c772 Rev. tribble to v101 with another putative open file leak fix ... Scalability bugfixes; can issues tens of thousands of queries to an reader without opening too many files -- Fixed missing close() statement in TribbleIndexedFeatureReader -- Fixed NPE in TabixIteratorLineReader -- Added scalability test that confirms .query() failure and subsequent fix Note this actually fixes a tested and reproducible scability issue. Might not be the only one but I believe it should do the trick. Sorry everyone for the inconvenience. Note that we now have a test in Tribble to ensure this doesn't happen again.		2012-05-04 15:40:41 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
public	BCF2: third checkpoint	2012-05-04 13:00:15 -04:00
settings	Rev. tribble to v101 with another putative open file leak fix	2012-05-04 15:40:41 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Rev'ing Tribble from 53 to 94	2012-05-03 07:31:47 -04:00
ivy.xml	Minor cleanup before push	2012-05-01 14:16:44 -04:00