Mark DePristo a8fb26bf01 A generic downsampler that reduces coverage for a bunch of reads ... -- Exposed the underlying minElementsPerStack parameter for LevelingDownsampler		2013-03-20 22:54:35 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	A generic downsampler that reduces coverage for a bunch of reads	2013-03-20 22:54:35 -04:00
test	AlignmentUtils.calcNumDifferentBases computes the number of bases that differ between a reference and read sequence given a cigar between the two.	2013-03-20 22:54:35 -04:00