carneiro d35c7d1029 - minor changes to the 'justclean' script to handle the Trio Cleaning. ... - fixing a bug on single ended BWA option of the data processing pipeline. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5662 348d0f76-0448-11de-a6fe-93d51630548a		2011-04-19 16:35:24 +00:00
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core	V1 of GATK Resource Bundling system	2011-04-18 19:23:45 +00:00
examples	When /etc/mailname is unreadable fall back to the hostname.	2011-04-11 20:22:44 +00:00
lib	Thanks to mark: VCFInfoToTable removed in favor of a more flexible walker. Slight change to the argument structure of the walker to make it play more nicely with Queue: the field list parsing is pushed into the command line system (e.g. the variable is exposed as a List<String> and not a String, so Queue doesn't have to join a list into a string only to have it broken out again. This also allows the user to specify -F field1 -F field2 -F field3 if he/she so desires.	2010-12-15 03:33:36 +00:00
oneoffs	- minor changes to the 'justclean' script to handle the Trio Cleaning.	2011-04-19 16:35:24 +00:00
playground	BatchMerge - AlleleVCF --> AllelesVCF, this (combined with Eric's fix) will solve James P.'s forum issue.	2011-04-15 22:03:16 +00:00