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gatk-3.8/protected/java/test/org/broadinstitute/sting/gatk/walkers
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David Roazen f63f27aa13 org.broadinstitute.variant refactor, part 2 
-removed sting dependencies from test classes
-removed org.apache.log4j dependency
-misc cleanup
 		2013-01-28 09:03:46 -05:00
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annotator Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
beagle Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
bqsr Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
compression/reducereads Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
diagnostics Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
diffengine Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
fasta Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
filters Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
genotyper org.broadinstitute.variant refactor, part 2 2013-01-28 09:03:46 -05:00
haplotypecaller Updating HC md5s for new cutting algorithm and default band pass filter parameters 2013-01-25 11:07:29 -05:00
indels Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
phasing Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
validation Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
varianteval org.broadinstitute.variant refactor, part 2 2013-01-28 09:03:46 -05:00
variantrecalibration Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
variantutils org.broadinstitute.variant refactor, part 2 2013-01-28 09:03:46 -05:00