gatk3的最后一个经典版本3.8

Guillermo del Angel a807205fc3 a) Minor optimization to softMax() computation to avoid redundant operations, results in about 5-10% increase in speed in indel calling. ... b) Added (but left commented out since it may affect integration tests and to isolate commits) fix to per-sample DP reporting, so that deletions are included in count. c) Bug fix to avoid having non-reference genotypes assigned to samples with PL=0,0,0. Correct behavior should be to no-call these samples, and to ignore these samples when computing AC distribution since their likelihoods are not informative.		2011-09-09 18:00:23 -04:00
public	a) Minor optimization to softMax() computation to avoid redundant operations, results in about 5-10% increase in speed in indel calling.	2011-09-09 18:00:23 -04:00
settings	Revving the Tribble jar where the DbsnpCodec class was renamed to OldDbsnpCodec. Updating GATK code accordingly.	2011-09-06 20:39:42 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Enable public-only tests.	2011-09-08 15:58:42 -04:00
ivy.xml	The tribble dependency is now handled through ivy. Revved tribble to r18 and removed obsolete build targets in build.xml	2011-08-11 16:38:29 -04:00