Ryan Poplin 85905dba92 Bugfix for GGA mode in UG silently ignoring indels ... -- Started by Mark. Finished up by Ryan. -- GGA mode still respected glm argument for SNP and INDEL models, so that you would silently fail to genotype indels at all if the -glm INDEL wasn't provided, but you'd still emit the sites, so you'd see records in the VCF but all alleles would be no calls. -- https://www.pivotaltracker.com/story/show/48924339 for more information -- [resolves #48924339]		2013-05-24 13:47:26 -04:00
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gatk	Bugfix for GGA mode in UG silently ignoring indels	2013-05-24 13:47:26 -04:00
utils	Archived banded logless PairHMM	2013-05-22 12:24:00 -04:00
package-info.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00