ebanks a7c306f757 -deal with offsets that can be -1 ... -added option to have "D"s inserted for deleted bases in pileup strings git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1635 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-16 16:44:57 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	-deal with offsets that can be -1	2009-09-16 16:44:57 +00:00
test/org/broadinstitute/sting	Fix for problem where err stream remapped to output stream in certain cases, (hopefully) completing Matt's hat trick of fail. Thanks, unit tests.	2009-09-16 08:33:56 +00:00