flannick cd4cd6db81 Added option to print out discordant sites in GenotypeConcordance ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4006 348d0f76-0448-11de-a6fe-93d51630548a		2010-08-10 19:55:19 +00:00
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alignment	IndexedFastaSequenceFile is now in Picard; transitioning to that implementation.	2010-07-01 04:40:31 +00:00
analyzecovariates	Changed logging level to default at INFO instead of WARN.	2010-08-09 16:42:48 +00:00
commandline	Changed logging level to default at INFO instead of WARN.	2010-08-09 16:42:48 +00:00
gatk	Added option to print out discordant sites in GenotypeConcordance	2010-08-10 19:55:19 +00:00
oneoffprojects	Starting the clean up of the sting.utils.genotype code which is all either moving to Tribble, moving to sting.utils.vcf, or being removed.	2010-08-10 02:16:05 +00:00
playground	Starting the clean up of the sting.utils.genotype code which is all either moving to Tribble, moving to sting.utils.vcf, or being removed.	2010-08-10 02:16:05 +00:00
queue	Changed logging level to default at INFO instead of WARN.	2010-08-09 16:42:48 +00:00
utils	Unit, integration, and performance tests are all busted, so this is a good time to make a big commit...	2010-08-10 04:18:29 +00:00