ebanks a70cf2b763 A bunch of changes needed to make outputting pooled calls possible ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2073 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-18 18:42:57 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	A bunch of changes needed to make outputting pooled calls possible	2009-11-18 18:42:57 +00:00
test/org/broadinstitute/sting	1. The joint estimation model now constrains genotypes to be AA,AB,or BB only (i.e. to use a single alternate allele). Note that this doesn't work for the old models (point estimate or SSG) because calculations aren't divided by alternate allele.	2009-11-18 17:43:15 +00:00