gatk-3.8/java/src/org/broadinstitute/sting
chartl a6dc8cd44e BTTC is now Tree Reducible allowing for parallelization.
Integration test comment changed to reflect actual date of last md5 update.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1901 348d0f76-0448-11de-a6fe-93d51630548a
2009-10-22 23:19:29 +00:00
..
alignment Read uints directly into longs. 2009-10-15 16:15:11 +00:00
gatk -Cleanup of the Joint Estimation code 2009-10-22 15:25:29 +00:00
playground BTTC is now Tree Reducible allowing for parallelization. 2009-10-22 23:19:29 +00:00
secondarybase Rev'ing Picard, which includes the update to get all the reads in the query region (GSA-173). With it come a bunch of fixes, including retiring the FourBaseRecaller code, and updated md5 for some walker tests. 2009-09-30 20:37:59 +00:00
utils Validates intervals against sequence dictionary header bounds. 2009-10-22 19:31:15 +00:00