a648b5e65e
-- Created new clean FastGenotype and GenotypeBuilder classes with contracts to enforce expected behavior and correctness. Tested utility of this approach by rewritting -- and then commenting out -- a path in BCF2Codec that could use this new code. Much cleaner interface now, but not yet hooked up to anything -- Disabled SHADOW_BCF generation and generating contigs in the output VCFs automatically to ensure that the current code bases integration tests, before switching the code to new Genotype class -- Code cleanup. Moved "AD" to VCFConstants under GENOTYPE_ALLELIC_DEPTHS. Uses in code replaced with constant |
||
|---|---|---|
| licensing | ||
| protected/java/src/org/broadinstitute/sting | ||
| public | ||
| settings | ||
| .gitignore | ||
| build.xml | ||
| ivy.xml | ||