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VectorPairHMM
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Update pom versions to mark the start of GATK 3.3 development
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2014-07-17 12:09:33 -04:00 |
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c
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After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.
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2014-05-19 17:36:41 -04:00 |
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chainFiles
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The contig is named MT not M in b36. Delivers PT68890442.
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2014-04-08 10:03:47 -04:00 |
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doc
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Refactored maven directories and java packages replacing "sting" with "gatk".
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2014-05-19 17:36:39 -04:00 |
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external-example
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Various fixes for package tests.
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2014-09-04 15:30:31 -04:00 |
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gatk-engine
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Do not process a variant if it is too large (> readLength), and log an error
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2014-10-20 15:51:32 -04:00 |
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gatk-queue
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Now passing in the path to the GATK directory to tests.
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2014-09-02 01:40:59 +08:00 |
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gatk-queue-extensions-generator
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Moved arguments controlling options in output files into the engine
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2014-09-05 21:18:11 -04:00 |
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gatk-queue-extensions-public
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Updated license information
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2014-10-14 17:10:12 -04:00 |
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gatk-root
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Added -writeFullFormat engine-level argument
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2014-09-17 08:25:27 -04:00 |
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gatk-tools-public
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Improved scatter contigs algorithm to be fairer when splitting a large number of contigs into a small number of parts.
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2014-10-22 16:26:17 +08:00 |
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gatk-utils
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Now passing in the path to the GATK directory to tests.
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2014-09-02 01:40:59 +08:00 |
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gsalib
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Changed license of gsalib R package from BSD to MIT
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2014-10-16 21:37:07 -04:00 |
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java/config
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Refactored maven directories and java packages replacing "sting" with "gatk".
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2014-05-19 17:36:39 -04:00 |
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package-tests
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Various fixes for package tests.
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2014-09-04 15:30:31 -04:00 |
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perl
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Fixing the liftover script to not require strict VCF header validation.
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2013-11-07 09:02:17 -05:00 |
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repo
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Added -writeFullFormat engine-level argument
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2014-09-17 08:25:27 -04:00 |
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src/main/scripts/shell
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For now, executing the delete_maven_links.sh just ahead of creating the symbolic links during the process-test-resources phase.
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2014-06-25 02:32:15 +08:00 |
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pom.xml
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Update pom versions to mark the start of GATK 3.3 development
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2014-07-17 12:09:33 -04:00 |
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