Eric Banks a623cca89a Bug fix for HaplotypeCaller, as reported on the forum: when reduced reads didn't completely overlap a deletion call, ... we were incorrectly trying to find the reference position of a base on the read that didn't exist. Added integration test to cover this case.		2013-01-16 22:47:58 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Bug fix for HaplotypeCaller, as reported on the forum: when reduced reads didn't completely overlap a deletion call,	2013-01-16 22:47:58 -05:00
test	Massive expansion of ActiveRegionTraversal unit tests, resulting in several bugfixes to ART	2013-01-16 15:30:00 -05:00