gatk3的最后一个经典版本3.8

Eric Banks a623cca89a Bug fix for HaplotypeCaller, as reported on the forum: when reduced reads didn't completely overlap a deletion call, ... we were incorrectly trying to find the reference position of a base on the read that didn't exist. Added integration test to cover this case.		2013-01-16 22:47:58 -05:00
licensing	Cleaning CRLF terminations in the licenses	2013-01-10 17:06:29 -05:00
protected/java	Bug fix for HaplotypeCaller, as reported on the forum: when reduced reads didn't completely overlap a deletion call,	2013-01-16 22:47:58 -05:00
public	Bug fix for HaplotypeCaller, as reported on the forum: when reduced reads didn't completely overlap a deletion call,	2013-01-16 22:47:58 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Updating Queue maven version to 0.0.2	2013-01-10 13:46:49 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	ReadBackedPileup cleanup	2013-01-11 15:17:18 -05:00