hanna e313eeede8 Push command-line expansions, such as BAM list unpacking and -B tag parsing, out ... into the CommandLine* classes. This makes it easier for external functionality (such as the VCF streamer) to use GenomeAnalysisEngine directly. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4897 348d0f76-0448-11de-a6fe-93d51630548a		2010-12-22 19:00:17 +00:00
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net/sf/picard/reference	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
org/broadinstitute/sting	Push command-line expansions, such as BAM list unpacking and -B tag parsing, out	2010-12-22 19:00:17 +00:00