Mark A. DePristo 38740b0ff5 First working version of the DiffNode readers for VCF and BAM files. Unit tests confirm the readers are approximately working. Skeleton of a working DiffObjects walker that will be able to provide detailed information about how exactly two files of the same type differ, so long as the files are supported by the DiffNode structure.		2011-07-04 16:11:42 -04:00
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vcf	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
HiSeq.10000.vcf	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
TabularDataTest.dat	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
TabularDataTest2.dat	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
ValidatingPileupTargets.list	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
defaultGATKConfig.cfg	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
diffTestMaster.vcf	First working version of the DiffNode readers for VCF and BAM files. Unit tests confirm the readers are approximately working. Skeleton of a working DiffObjects walker that will be able to provide detailed information about how exactly two files of the same type differ, so long as the files are supported by the DiffNode structure.	2011-07-04 16:11:42 -04:00
diffTestTest.vcf	First working version of the DiffNode readers for VCF and BAM files. Unit tests confirm the readers are approximately working. Skeleton of a working DiffObjects walker that will be able to provide detailed information about how exactly two files of the same type differ, so long as the files are supported by the DiffNode structure.	2011-07-04 16:11:42 -04:00
exampleBAM.bam	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
exampleBAM.bam.bai	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
exampleFASTA.dict	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
exampleFASTA.fasta	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
exampleFASTA.fasta.fai	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
exampleNORG.bam	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
exampleNORG.bam.bai	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
gFFTest.gff	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
genotypes_chr1_ASW_phase3.3_first500.hapmap	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
logisticParamsTest.list	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
recalConfig_1KG.cfg	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
sampleBedFile.bed	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
small.dbsnp.rod	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
tranches.4.txt	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
tranches.6.txt	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
tranches.raw.dat	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00