Mark DePristo 1f45551a15 Bugfixes to G count types in VCF header ... -- Previously VCF header lines of count type G assumed that the sample would be diploid. -- Generalized the code to take a VariantContext and return the right result for G count types by calling into the correct numGenotypes in GenotypeLikelihoods class -- renamed calcNumGenotypes to numGenotypes, which uses a static cache in the class -- calcNumGenotypes is private, and is used to build the static cache or to compute on the fly for uncached No. allele / ploidy combinations -- VariantContext calls into getMaxPloidy in GenotypesContext, which caches the max ploidy among samples -- Added extensive unit tests that compare A and G type values in genotypes		2012-06-26 15:28:34 -04:00
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sting	Bugfixes to G count types in VCF header	2012-06-26 15:28:34 -04:00