Eric Banks e8a6460a33 After merging with Yossi's fix I can confirm that the AD is fixed when going through the HC too. Added similar fixes to DP and FS annotations too.		2012-10-05 16:37:42 -04:00
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src/org/broadinstitute/sting	Add a separate max alt alleles argument for indels that defaults to 2 instead of 3. PLEASE TAKE NOTE.	2012-10-04 13:52:14 -04:00
test/org/broadinstitute/sting/gatk/walkers	After merging with Yossi's fix I can confirm that the AD is fixed when going through the HC too. Added similar fixes to DP and FS annotations too.	2012-10-05 16:37:42 -04:00