gatk3的最后一个经典版本3.8

Mark DePristo a5901cdd20 Bugfix for printProgress in TraverseReadsNano ... -- Must provide a single bp position (1:10) not the range of the read (1:1-50). ProgressMeter now checks at runtime for this problem as well.		2013-01-04 11:39:24 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	BQSR cleanup: merge Advanced and Standard recalibration engine into just the RecalibrationEngine	2013-01-04 11:39:24 -05:00
public	Bugfix for printProgress in TraverseReadsNano	2013-01-04 11:39:24 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Re-enabling contracts in tests in build.xml	2013-01-02 11:29:25 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00