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meganshand a57500b2fc ROCCurve High Confidence Mode 
Integration Tests

Updated test

Changed method

Minor changes

Changed whitespace

Fixed uncalled counts and 0 in R

Fixed ReadBackedPileUp

Removed imports and changed MD5

Fixed failing test

Adding vqslod color

Updating script to create KB

Fixing integration test now that the KB is bigger

Adressing comments
 		2015-10-21 21:30:54 -04:00
..
VectorPairHMM Updated licenses for 2015 2015-08-06 15:23:11 -04:00
c After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive. 2014-05-19 17:36:41 -04:00
chainFiles The contig is named MT not M in b36. Delivers PT68890442. 2014-04-08 10:03:47 -04:00
doc Updated readme in public/doc to just point to the website 2015-03-12 11:52:48 -04:00
external-example Updated licenses for 2015 2015-08-06 15:23:11 -04:00
gatk-engine Fix Sample mergeValues failure when merging identical string values (#1156). 2015-10-12 09:56:05 -04:00
gatk-queue Minor updates to previous ParallelShell commit. 2015-09-29 09:36:37 -03:00
gatk-queue-extensions-generator Updated licenses for 2015 2015-08-06 15:23:11 -04:00
gatk-queue-extensions-public Minor updates to previous ParallelShell commit. 2015-09-29 09:36:37 -03:00
gatk-root Move htsjdk & picard to version 1.140 2015-10-08 10:42:05 -04:00
gatk-tools-public VariantAnnotator now supports annotating FILTER field from an external resource. 2015-10-14 14:26:21 -04:00
gatk-utils ROCCurve High Confidence Mode 2015-10-21 21:30:54 -04:00
gsalib Update pom versions to mark the start of GATK 3.5 development 2015-05-15 00:44:54 -04:00
java/config Refactored maven directories and java packages replacing "sting" with "gatk". 2014-05-19 17:36:39 -04:00
package-tests Update pom versions to mark the start of GATK 3.5 development 2015-05-15 00:44:54 -04:00
perl Fixing the liftover script to not require strict VCF header validation. 2013-11-07 09:02:17 -05:00
repo Updated gatk so it compiles on java 8 2015-06-26 15:59:46 -04:00
src/main Added faster built executable, non-packaged jars. 2014-11-05 00:30:46 +08:00
pom.xml Update pom versions to mark the start of GATK 3.5 development 2015-05-15 00:44:54 -04:00