Mauricio Carneiro 8a115edbaf ReduceReads is now scattered by contig ... It's no longer safe to scatter/gather by interval because now we don't hard-clip to the intervals anymore.		2012-12-10 15:25:27 -05:00
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src/org/broadinstitute/sting	ReduceReads is now scattered by contig	2012-12-10 15:25:27 -05:00
test/org/broadinstitute/sting	Related bug fixes to GGA mode in the HC: some variants (especially MNPs) were causing problems because they don't have to start at the current location to match the allele being genotyped. Fixed.	2012-12-10 14:47:04 -05:00