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gatk-3.8/public/testdata
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Mauricio Carneiro a19c27297f continuing the BQSR triage... 
* fixed the loading of the new reduced size reports
   * reduced BQSR scala script memory to 2Gb
   * removed dcov parameter from BQSR scala script
   * fixed estimatedQReported calculation from -log10(pe) to -10*log10(pe).
   * updated md5's with the proper PHRED scaled EstimatedQReported
 		2012-04-05 14:34:15 -04:00
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vcf
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HiSeq.10000.bgzip.vcf.gz Adding bgzip vcf file for unit tests 2011-09-21 15:39:45 -04:00
HiSeq.10000.vcf
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HiSeq.10000.vcf.gz GZIP VCF for testing 2011-08-19 09:05:39 -04:00
TabularDataTest.dat
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TabularDataTest2.dat
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ValidatingPileupTargets.list
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ac0.vcf VariantEval now includes -keepAC0 argument to include sites with alt alleles but AC 0 in analyses 2012-04-04 15:37:12 -04:00
breakpoint-example.vcf Added support for breakpoint alleles 2012-02-23 12:14:48 -05:00
ceutrio.ped Oops, forgot the PED test file 2011-10-05 21:09:08 -07:00
defaultGATKConfig.cfg
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diffTestMaster.vcf
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diffTestTest.vcf
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exampleBAM.bam PPP pipeline test 2011-12-11 17:32:21 -05:00
exampleBAM.bam.bai PPP pipeline test 2011-12-11 17:32:21 -05:00
exampleBAM.simple.bai Testdata for diffObjects. 2011-07-18 10:47:03 -04:00
exampleBAM.simple.bam Testdata for diffObjects. 2011-07-18 10:47:03 -04:00
exampleDBSNP.vcf PPP pipeline test 2011-12-11 17:32:21 -05:00
exampleFASTA.dict
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exampleFASTA.fasta
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exampleFASTA.fasta.amb Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.ann Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.bwt Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.fai
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exampleFASTA.fasta.pac Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.rbwt Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.rpac Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.rsa Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleFASTA.fasta.sa Data Processing Pipeline Test 2011-12-12 00:24:51 -05:00
exampleGRP.grp continuing the BQSR triage... 2012-04-05 14:34:15 -04:00
exampleNORG.bam
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exampleNORG.bam.bai
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gFFTest.gff
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gatkrunreport.fail.xml analyzeRunReports cleanup for new minimal GATKRunReport structure 2012-03-12 09:46:26 -04:00
gatkrunreport.success.xml analyzeRunReports cleanup for new minimal GATKRunReport structure 2012-03-12 09:46:26 -04:00
genotypes_chr1_ASW_phase3.3_first500.hapmap
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logisticParamsTest.list
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overlapTest.bed Testdata for IntervalStratification 2011-11-10 11:08:34 -05:00
recalConfig_1KG.cfg
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sampleBedFile.bed
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small.dbsnp.rod
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tranches.4.txt
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tranches.6.txt
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tranches.raw.dat
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withSymbolic.b37.vcf Testdata for IntervalStratification 2011-11-10 11:08:34 -05:00