aaron 0aba688e6f Added a interface that all our SAMRecord iterators should try to code to. This is in the effort to keep our code generic ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@609 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-06 21:40:41 +00:00
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dataSources	Fixes to try and speed up unmapped read traversals. Still not nearly as fast as they should be, but the next step would be to modify samtools code.	2009-05-05 18:17:07 +00:00
executive	Add tag to ignore node class.	2009-04-30 20:27:34 +00:00
iterators	Changes to the interface to the simple data source rippled out to a bunch of files.	2009-04-30 20:35:56 +00:00
traversals	Added a interface that all our SAMRecord iterators should try to code to. This is in the effort to keep our code generic	2009-05-06 21:40:41 +00:00
GenomeAnalysisTKTest.java	Cut the test time down	2009-05-05 22:05:51 +00:00
OutputTrackerTest.java	N-way parallelism. Works for small test cases. Untested for large test cases.	2009-05-01 19:34:09 +00:00