aaron bae4256574 Started the process to make the GATK engine into a runnable object so we can call it from other processes. Step 1: make a configuration object that can serialize to and from an XML file. This way we can store the information everyone uses shell scripts for. Also we can now pull the list of params out of the GenomeAnalysisTK.java. More to come... ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@636 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-08 01:25:26 +00:00
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gatk	Added a interface that all our SAMRecord iterators should try to code to. This is in the effort to keep our code generic	2009-05-06 21:40:41 +00:00
utils	Started the process to make the GATK engine into a runnable object so we can call it from other processes. Step 1: make a configuration object that can serialize to and from an XML file. This way we can store the information everyone uses shell scripts for. Also we can now pull the list of params out of the GenomeAnalysisTK.java. More to come...	2009-05-08 01:25:26 +00:00
BaseTest.java	Added BCEL and some basic instrumenation code to the test library.	2009-05-06 17:18:23 +00:00
TrivialInstrumenter.java	Added BCEL and some basic instrumenation code to the test library.	2009-05-06 17:18:23 +00:00