gatk3的最后一个经典版本3.8

Ryan Poplin a507381a33 Updating BQSR RecalibrationEngine to work correctly with empty BQSR tables. ... -- Previously would crash when a scatter/gather interval contained no usable data. -- Added unit test to cover this case.		2013-04-11 16:27:59 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Updating BQSR RecalibrationEngine to work correctly with empty BQSR tables.	2013-04-11 16:27:59 -04:00
public	Bug fix in SWPairwiseAlignment.	2013-04-10 16:04:37 -04:00
settings	Don't allow users to specify keys and IDs that contain angle brackets or equals signs (not allowed in VCF spec).	2013-04-05 00:52:32 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Disable Contracts for Java for tests	2013-04-04 11:56:17 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00