chartl d34c5640d2 Bugfix for clf version of extract samples. Due to dynamic shell creation and bsubs and whatnot, the OR pipe for grep ("a|b") needs to be super-escaped ("a\\\\\\\\|b"). ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4829 348d0f76-0448-11de-a6fe-93d51630548a		2010-12-13 19:06:30 +00:00
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old	Restructuring my qscripts	2010-12-11 20:58:45 +00:00
RefineGenotypesAndMerge.q	Commit for Ryan	2010-10-05 19:04:10 +00:00
batchMergePipeline.q	Tightening of the batch merging pipeline. Optimized to run on hour queue, so please: if you run this, crush 'hour' with it. Testing is forthcoming, but it merged 700 samples overnight.	2010-12-08 14:36:23 +00:00
fullCallingPipelineV2.q	java changes:	2010-12-12 05:10:45 +00:00
omni_qc.q	Bug fix to GenotypeConcordance. AC metrics get instantiated based on number of eval samples; if Comp has more samples, we can see AC indeces outside the bounds of the array.	2010-11-03 19:23:03 +00:00
private_mutations.q	Bugfix for clf version of extract samples. Due to dynamic shell creation and bsubs and whatnot, the OR pipe for grep ("a|b") needs to be super-escaped ("a\\\\\\\\|b").	2010-12-13 19:06:30 +00:00