gatk3的最后一个经典版本3.8
 
 
 
 
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Mauricio Carneiro a4fbf9df1e SplitReads walker implementation (for AGBT talk)
- walker simulates sequencing with different lengths to evaluate mapping/alignment biases relative to read length
   - split : splits reads n-ways generating 2^n reads for each read of the same length.
   - chop : chops the right end tail of the read creating 1 smaller read as if the sequencer stopped short.
   - mate information is preserved for chopped reads, and re-indexed for split reads so that each split still points at the corresponding split on the mate.
   - added systematic unit tests

GSATDG-23
2013-01-23 20:55:28 -07:00
licensing Refrain from pushing symlinks into the repo... not all filesystems treat it correctly 2013-01-22 15:18:19 -07:00
protected/java Merge branch 'master' of gsa2:/humgen/gsa-scr1/chartl/dev/unstable 2013-01-23 14:49:34 -05:00
public Fix trivial call in unit test 2013-01-23 13:51:58 -05:00
settings Final r119 tribble jar 2012-11-02 14:30:33 -04:00
.gitignore adding some directories to gitignore 2012-09-27 11:09:41 -04:00
build.xml Updating Queue maven version to 0.0.2 2013-01-10 13:46:49 -05:00
intellij_example.tar.bz2 Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!) 2012-09-27 11:04:56 -04:00
ivy.xml ReadBackedPileup cleanup 2013-01-11 15:17:18 -05:00