ebanks 12c0de6170 Added ability to clean using only known indels. Added integration test for it. Fixed vcf->vc conversion for indels which was busted. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3678 348d0f76-0448-11de-a6fe-93d51630548a		2010-06-30 01:20:56 +00:00
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IndelRealignerIntegrationTest.java	Added ability to clean using only known indels. Added integration test for it. Fixed vcf->vc conversion for indels which was busted.	2010-06-30 01:20:56 +00:00
IndelRealignerPerformanceTest.java	Fix performance tests	2010-06-28 21:51:48 +00:00
RealignerTargetCreatorIntegrationTest.java	add parallel option to target creator for masking out reads with bad mates	2010-06-28 22:13:25 +00:00
RealignerTargetCreatorPerformanceTest.java	Adding performance tests for the indel realigner; should take ~3 hours.	2010-04-11 04:45:22 +00:00