chartl a463dbcda1 Refactoring the qscript directory; oneoffs, playground, and core ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5017 348d0f76-0448-11de-a6fe-93d51630548a		2011-01-19 15:23:40 +00:00
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qscript	Refactoring the qscript directory; oneoffs, playground, and core	2011-01-19 15:23:40 +00:00
src/org/broadinstitute/sting	VQSR now only uses the valid polymorphic sites for training and truth sensitivity calculations. Any number of tracks whose ROD binding begins with the name truth can be used as truth sensitivity tracks.	2011-01-18 20:48:19 +00:00
test/org/broadinstitute/sting/queue	Updated to reflect QD changes in r4984	2011-01-13 20:10:21 +00:00