Ryan Poplin a45011d7e7 Adding mode to VQSR to not output variant records that are filtered out after applying the recalibration. Necessary for 1000G calling.		2013-08-12 11:22:59 -04:00
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java	Adding mode to VQSR to not output variant records that are filtered out after applying the recalibration. Necessary for 1000G calling.	2013-08-12 11:22:59 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00