Mark DePristo a4334a67e0 SamplePartitioner optimizations and bugfixes ... -- Use a linked hash map instead of a hash map since we want to iterate through the map fairly often -- Ensure that we call doneSubmittingReads before getting reads for samples. This function call fell out before and since it wasn't enforced I only noticed the problem while writing comments -- Don't make unnecessary calls to contains for map. Just use get() and check that the result is null -- Use a LinkedList in PassThroughDownsampler, since this is faster for add() than the existing ArrayList, and we were's using random access to any resulting		2013-01-14 16:30:16 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	SamplePartitioner optimizations and bugfixes	2013-01-14 16:30:16 -05:00
test	LIBS bugfix: kept reads now only (correctly) includes reads that at least passed the reservoir	2013-01-14 16:30:16 -05:00