hanna a40e64e47b A downsampling validator. Compares the generated pileup passed in from the alignment context to the reads, ... passed in as a Tribble SAM text feature. If the generated pileup contains a valid set of reads according to the downsampling rules, the test passes. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3421 348d0f76-0448-11de-a6fe-93d51630548a		2010-05-23 21:49:54 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	A downsampling validator. Compares the generated pileup passed in from the alignment context to the reads,	2010-05-23 21:49:54 +00:00
test/org/broadinstitute/sting	a) Made HaplotypeScore default annotation. This changed several integration tests, whose MD5 is now updated.	2010-05-21 22:25:17 +00:00