Mauricio Carneiro e35fd1c717 Merging CMI-0.5.0 and GATK-2.2 together.		2012-11-14 10:42:03 -05:00
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qscript/org/broadinstitute/sting/queue/qscripts	Only run UG in the bundle for chr20	2012-10-30 15:09:46 -04:00
src/org/broadinstitute/sting/queue	Scala classes were only returning direct subclasses (confirmed when inspected in debugger) so changed PluginManager to allow specifying the explicit subclass.	2012-11-14 10:33:20 -05:00
test/org/broadinstitute/sting/queue	Allow each pipeline test the max of 10 hours to run	2012-11-02 12:40:56 -04:00