gatk3的最后一个经典版本3.8

Mark DePristo a3d2764d11 Fixed: GSA-392 @arguments with just a short name get the wrong argument bindings ... -- Now blows up if an argument begins with -. Implementation isn't pretty, as it actually blows up during Queue extension creation with a somewhat obscure error message but at least its something.		2012-08-17 11:49:01 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	FindBugs 'Efficiency' fixes	2012-08-16 15:40:52 -04:00
public	Fixed: GSA-392 @arguments with just a short name get the wrong argument bindings	2012-08-17 11:49:01 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Convert external.build.dir and external.dist.dir back to paths	2012-08-15 23:04:10 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00