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gatk-3.8/java/src/org/broadinstitute/sting/secondarybase
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kiran 28bf7ec8ad Aesthetic cleanup. 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@735 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-05-17 04:09:23 +00:00
..
AbstractFirecrestFileParser.java Documentation. 2009-05-14 18:58:43 +00:00
AddFourProbsToSAM.java Documentation. 2009-05-14 18:58:43 +00:00
AnnotateSecondaryBase.java Aesthetic cleanup. 2009-05-17 04:09:23 +00:00
BasecallingBaseModel.java Documentation. 2009-05-14 18:58:43 +00:00
BasecallingReadModel.java Documentation. 2009-05-14 18:58:43 +00:00
BasecallingStats.java Aesthetic cleanup. 2009-05-17 04:09:23 +00:00
BasecallingTrainingSet.java Fixed a typo in a comment. 2009-05-15 20:07:31 +00:00
CombineSamAndFourProbs.java Documentation. 2009-05-14 18:58:43 +00:00
FirecrestFileParser.java Documentation. 2009-05-14 18:58:43 +00:00
FirecrestFilenameComparator.java Moved secondary base stuff out of playground for the purpose of making it a core utility. Modified package names and imports such that things would build properly. 2009-05-12 20:24:18 +00:00
FirecrestReadData.java Moved secondary base stuff out of playground for the purpose of making it a core utility. Modified package names and imports such that things would build properly. 2009-05-12 20:24:18 +00:00
FourBaseRecaller.java Documentation. 2009-05-14 18:58:43 +00:00
FourIntensity.java Documentation. 2009-05-14 18:58:43 +00:00
FourProb.java Documentation. 2009-05-14 18:58:43 +00:00
FourProbRead.java Documentation. 2009-05-14 18:58:43 +00:00
IlluminaParser.java Documentation. 2009-05-14 18:58:43 +00:00
MatchSQTagToStrand.java Documentation. 2009-05-14 18:58:43 +00:00
RawRead.java Documentation. 2009-05-14 18:58:43 +00:00