gatk3的最后一个经典版本3.8

aaron a343f3eab7 Fixed bug where we weren't setting the reads group correctly. Also added code to set the printMetrics field of the singleSampleGenotyper from the Pool caller, it was null excepting out for me without that set. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@548 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-27 15:17:20 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Updated the hello world document to reflect system changes.	2009-04-22 23:25:15 +00:00
java	Fixed bug where we weren't setting the reads group correctly. Also added code to set the printMetrics field of the singleSampleGenotyper from the Pool caller, it was null excepting out for me without that set.	2009-04-27 15:17:20 +00:00
python	Actually has working version of the python script to merge multiple bam files	2009-04-24 19:15:55 +00:00
settings	Revert accidental checkin of hacked picard build.	2009-04-27 09:47:10 +00:00
shell	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
testdata	Basic logistic regression support for calibrating qualities; mostly for Andrew to experiment with	2009-04-24 19:09:50 +00:00
build.xml	Added the base test case, fixed the rest of the test cases to follow suit. Added more verbose output to ant for junit tests.	2009-04-14 17:11:38 +00:00
ivy.xml	Added castor dependency.	2009-04-07 22:27:39 +00:00