Valentin Ruano-Rubio bf630abe88 Fixed nocall (./.) without PLs bug in GVCF output ... Story: https://www.pivotaltracker.com/story/show/65388246 Additional changes and notes: 1. The fix consist in forcing the output of all PLs by setting the standard flag for that '-allSitePLs'. 2. BP_RESOLUTION was handled differently to GVCF in some aspect that should be common. That has been fixed.		2014-02-07 19:30:26 -05:00
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gatk-protected	Fixed nocall (./.) without PLs bug in GVCF output	2014-02-07 19:30:26 -05:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00
pom.xml	Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script.	2014-02-03 13:50:46 -05:00