Ryan Poplin a29fc6311a New debug option to output the assembly graph in dot format. Merge nodes in assembly graph when possible.		2012-03-21 15:48:55 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	New debug option to output the assembly graph in dot format. Merge nodes in assembly graph when possible.	2012-03-21 15:48:55 -04:00
test	Caching log calculations cut the non-Map runtime of HaplotypeCaller in half. Moved the qual log cache used in HC and PairHMM into a common place and added unit tests.	2012-03-21 08:45:42 -04:00