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gatk-3.8/protected/java/test/org/broadinstitute/sting/gatk/walkers
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Ryan Poplin 79ef41e7b1 Added some docs, unit test, and contracts to SimpleDeBruijnAssembler. 
-- Testing that cycles in the reference graph fail graph construction appropriately.
-- Minor bug fix in assembly with reduced reads.

Added some docs and contracts to SimpleDeBruijnAssembler

Added a unit test to SimpleDeBruijnAssembler
 		2013-02-04 15:17:22 -05:00
..
annotator Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
beagle Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
bqsr Update MD5s to reflect version number change in the BAM header 2013-02-01 13:51:31 -05:00
compression/reducereads More RR-related updates and tests. 2013-02-04 12:57:43 -05:00
diagnostics Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
diffengine Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
fasta Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
filters Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
genotyper Apparently I'm a failure at rebasing...there should have been only one commit message to write. But whatever, here it is again: 2013-02-04 14:16:28 -05:00
haplotypecaller Added some docs, unit test, and contracts to SimpleDeBruijnAssembler. 2013-02-04 15:17:22 -05:00
indels Update MD5s to reflect version number change in the BAM header 2013-02-01 13:51:31 -05:00
phasing Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
validation Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
varianteval Move some VCF/VariantContext methods back to the GATK based on feedback 2013-01-29 16:56:55 -05:00
variantrecalibration Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
variantutils Move BaseUtils back to the GATK by request, along with associated utility methods 2013-01-30 13:09:44 -05:00