gatk-3.8/public/java/test/org/broadinstitute/sting/gatk
Eric Banks a26b04ba17 Extensive refactoring of the GATKReports. This was a beast.
The practical differences between version 1.0 and this one (v1.1) are:

* the underlying data structure now uses arrays instead of hashes, which should drastically reduce the memory overhead required to create large tables.
* no more primary keys; you can still create arbitrary IDs to index into rows, but there is no special cased primary key column in the table.
* no more dangerous/ugly table operations supported except to increment a cell's value (if an int) or to concatenate 2 tables.

Integration tests change because table headers are different.
Old classes are still lying around.  Will clean those up in a subsequent commit.
2012-05-18 01:11:26 -04:00
..
datasources Bug fix for: https://getsatisfaction.com/gsa/topics/problem_with_indelrealigner_and_l_unmapped 2012-04-27 09:58:38 -04:00
executive Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
filters Taking care of bad cigars in the GATK 2012-03-20 14:32:57 -04:00
iterators Removing extended event related unit tests 2012-04-02 14:40:36 -04:00
refdata Merge with master 2011-11-19 09:56:06 -05:00
report Extensive refactoring of the GATKReports. This was a beast. 2012-05-18 01:11:26 -04:00
samples Added function to get founders IDs in SampleDB 2012-04-25 12:49:36 -04:00
traversals First pass of the asynchronous block loader. 2011-11-18 15:02:59 -05:00
walkers Extensive refactoring of the GATKReports. This was a beast. 2012-05-18 01:11:26 -04:00
EngineFeaturesIntegrationTest.java More extensive testing of type of error thrown in multi-threaded walker test 2012-04-13 09:23:33 -04:00
GenomeAnalysisEngineUnitTest.java Allow processing of empty intervals, but warn user when this case is encountered. 2011-10-28 12:12:14 -04:00
WalkerManagerUnitTest.java Moving more tools over to use the standard VC arg collection. Also, while I'm in there, I removed all of the empty references to @Requires given that it's no longer relevant. 2011-08-10 12:20:18 -04:00