Matt Hanna a259bfefd4 First commit addressing problems running RTC in parallel. ... Turns out that because the RTC is the first walker to 'correctly' tree reduce according to functional programming standards, the RTC has revealed a few problems with the tree reducer holding on to too much data. This is the first and smaller of two commits to reduce memory consumption. The second commit will likely be pushed after GATK1.4 is released.		2011-12-29 16:22:14 -05:00
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R	Protect ourselves when iteration is present but there's only a single iteration in queueJobReport.R	2011-12-19 10:08:38 -05:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	First commit addressing problems running RTC in parallel.	2011-12-29 16:22:14 -05:00
packages	Revved Picard to incorporate tfennell's AsyncSAMFileWriter.	2011-12-06 10:37:42 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Updating the MD5s	2011-12-21 15:14:05 -05:00
testdata	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00