gatk-3.8/java
kshakir a1f8aa90c0 Added an integration test showing how to use LSF C API to get LSF parameters.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@6025 348d0f76-0448-11de-a6fe-93d51630548a
2011-06-21 22:54:55 +00:00
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config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src Fixing a silly bug of mine: when a realignment target begins at position 1 of a contig, it was possible to have some reads get emitted out of order (triggering an exception in the SAMFileWriter). This is fixed by moving around some parentheses. Tim, if you are reading this: feel free to take this fix in whenever it's convenient. I.e. it's not critical as the only user who has been hit by it has a reference with over 130K short contigs. Committing in SVN so that it gets incorporated immediately (and I can respond on GS now). 2011-06-21 21:42:38 +00:00
test Added an integration test showing how to use LSF C API to get LSF parameters. 2011-06-21 22:54:55 +00:00