gatk3的最后一个经典版本3.8

Christopher Hartl a1e72ebe4e InsertSizeDistribution was totally busted, and was killing my retrogene pipeline. I'm not sure GATKReports are any longer meant to be dynamically updated, so I've altered it to calculate the histogram internally and dump it to a molten output table. Also the genotyper wants to read in a flat file, so that'll need to be changed in the near future.		2012-06-27 11:25:21 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
protected/java	Moving ReduceReads into protected	2012-06-25 17:01:33 -04:00
public	Refactored parsing of Rod/IntervalBinding. Queue S/G now uses all interval arguments passed to CommandLineGATK QFunctions including support for BED/tribble types, XL, ISR, and padding.	2012-06-27 01:15:22 -04:00
settings	Rev tribble to 110. Log is:	2012-06-26 15:28:32 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	ant fasttest: for when you just can't wait	2012-06-01 15:17:18 -04:00
ivy.xml	JEXL update	2012-06-21 15:17:21 -04:00